I haven't midi mapped anything in sometime but I think if you hit the letter "C" while midi mapping the function, it'll cycle through a few different ways of that knob functioning. One of those ways should work how you want it to.

I've tried that, it doesn't :( The way it sends midi is to SDJ is kind of strange, i got it to work in traktor though

Also the Tab key will cycle thru settings as well whem mapping ..think thats what your looking for..

The time encoder sends multiple midi signals for level/depth (CC091) and time (CC013 and CC045). The midi clock signal varies depending on what effect you have selected (values is double for filter, flanger, and phaser) and can also be controlled by the beat effect buttons. It's not possible to stop sending midi clock on the mixer itself. One solution is to use a program like Bomes MIDI Translator to filter out Timing Messages and Active Messages. Then enable the virtual midi port for Bomes in Serato and then midi map the encoder.