You can use the Add to Queue feature in handbrake to setup individual chapter files before importing the DVD.
Taken from handbrakes site:
trac.handbrake.fr
Quote:
Queue
The queue allows you to set up a batch of video processing jobs at one time. Each job will then be processed sequentially.
Set everything up for the first encode. Except, instead of clicking the "Encode" button, click the "Add to queue" button on the toolbar.
It'll seem like nothing happened, except for "1 task in queue" appearing at the bottom of the window. Just go ahead and change the title, chapter, or source in use, and be sure to rename the destination file. Tweak any settings you want. Again click "Add to queue" instead of "Encode." Repeat these steps for the whole batch of videos you wish to convert.
When you've got everything set up, it's time to click "Encode." All your movies will be encoded in one batch.
To see detailed information about what jobs are in the queue, or to remove a job from the queue, click the "Show Queue" button on the toolbar. A sheet will pop up with a list of all queued jobs with what settings they use, and with buttons to remove any particular job.
Jobs can be both added and removed from the queue even once you've started encoding.
However, if you cancel encoding, you will lose the entire queue.
